calculate insert size paired end reads
install samtools
samtools sort sample.bam > sort_sample.bam
samtools stats sort_sample.bam | grep "insert size average" > output.txt
more output.txt
Vcf-Tools : Error "Broken Vcf Header, No Column Names?'"
Vcf-Tools : Error "Broken Vcf Header, No Column Names?'" if u have this error.... you can use use tabix then http://bioinfoconcepts.blogspot.in/2015/04/tiindexbuild2-fail-to-create-index-file.html after then type vcf-compare a.vcf.gz b.vcf.gz c.vcf.gz
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