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Bioinfo concepts

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cosmic database download

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June 07, 2016

1) install ANNOVAR

2) mkdir humandb

3) annotate_variation.pl --buildver hg19 --downdb -webfrom annovar cosmic70 /humandb

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Comments

[ti_index_build2] fail to create the index file error in vcftools

April 02, 2015

[ti_index_build2] fail to create the index file for vcf file error in vcftools If you get this error then type 1 )su and type your root password then type 2) tabix -p vcf filename.vcf.gz

Can't exec "java": No such file or directory at /usr/bin/fastqc line 256.

April 25, 2016

If you get this error "Can't exec "java": No such file or directory at /usr/bin/fastqc line 256" 1. open the terminal 2. say " sudo apt-get install default-jre "

Vcf-Tools : Error "Broken Vcf Header, No Column Names?'"

April 03, 2015

Vcf-Tools : Error "Broken Vcf Header, No Column Names?'" if u have this error.... you can use use tabix then http://bioinfoconcepts.blogspot.in/2015/04/tiindexbuild2-fail-to-create-index-file.html after then type vcf-compare a.vcf.gz b.vcf.gz c.vcf.gz